Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs7140887 chr14:102189934 C/T 1.09E-14 505 21.77 27.6 5.4 KM Plot
LGG rs7140888 chr14:24416128 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs7141234 chr14:24416322 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs7141463 chr14:24416467 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs7141633 chr14:24416557 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs7141804 chr14:24416657 T/C 4.04E-5 508 23.63 21.15 15.53 KM Plot
LGG rs71491325 chr10:934281 A/C 7.58E-8 496 22.22 24.37 14.15 KM Plot
LGG rs7149475 chr14:24411868 C/T 4.06E-5 508 23.58 21.15 16.63 KM Plot
LGG rs71505111 chr8:6181114 G/A 1.77E-5 506 22.37 23.83 7.72 KM Plot
LGG rs71505115 chr8:6185358 C/T 2.29E-5 497 21.85 24.07 7.72 KM Plot
LGG rs71505116 chr8:6187694 T/A 1.81E-5 505 22.12 24.03 7.72 KM Plot
LGG rs71505117 chr8:6187696 G/A 1.81E-5 505 22.12 24.03 7.72 KM Plot
LGG rs71505118 chr8:6187699 A/G 1.81E-5 505 22.12 24.03 7.72 KM Plot
LGG rs71505122 chr8:6187783 T/C 1.69E-5 507 21.87 24.05 7.72 KM Plot
LGG rs71525720 chr8:6176396 A/T 1.86E-5 506 22.37 23.8 7.72 KM Plot